Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/AH/AH1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/AH/AH1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  85,107
 Normal Paired: 50,651 (59.51%)
 Chimeric Paired: 22,851 (26.85%)
 Chimeric Ambiguous: 10,977 (12.90%)
 Unmapped: 628 (0.74%)
 Ligation Motif Present: 66,688 (78.36%)
Alignable (Normal+Chimeric Paired): 73,502 (86.36%)
Unique Reads: 67,223 (78.99%)
PCR Duplicates: 5,748 (6.75%)
Optical Duplicates: 531 (0.62%)
Library Complexity Estimate: 438,527
Intra-fragment Reads: 3,493 (4.10% / 5.20%)
Below MAPQ Threshold: 8,338 (9.80% / 12.40%)
Hi-C Contacts: 55,392 (65.09% / 82.40%)
 Ligation Motif Present: 37,082  (43.57% / 55.16%)
 3' Bias (Long Range): 71% - 29%
 Pair Type %(L-I-O-R): 25% - 25% - 24% - 25%
Inter-chromosomal: 12,521  (14.71% / 18.63%)
Intra-chromosomal: 42,871  (50.37% / 63.77%)
Short Range (<20Kb): 30,479  (35.81% / 45.34%)
Long Range (>20Kb): 12,392  (14.56% / 18.43%)