Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/AH/AH2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/AH/AH2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  140,701
 Normal Paired: 79,199 (56.29%)
 Chimeric Paired: 41,863 (29.75%)
 Chimeric Ambiguous: 18,576 (13.20%)
 Unmapped: 1,063 (0.76%)
 Ligation Motif Present: 107,146 (76.15%)
Alignable (Normal+Chimeric Paired): 121,062 (86.04%)
Unique Reads: 109,797 (78.04%)
PCR Duplicates: 10,291 (7.31%)
Optical Duplicates: 974 (0.69%)
Library Complexity Estimate: 660,038
Intra-fragment Reads: 6,116 (4.35% / 5.57%)
Below MAPQ Threshold: 14,286 (10.15% / 13.01%)
Hi-C Contacts: 89,395 (63.54% / 81.42%)
 Ligation Motif Present: 55,790  (39.65% / 50.81%)
 3' Bias (Long Range): 70% - 30%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 23,878  (16.97% / 21.75%)
Intra-chromosomal: 65,517  (46.56% / 59.67%)
Short Range (<20Kb): 42,073  (29.90% / 38.32%)
Long Range (>20Kb): 23,444  (16.66% / 21.35%)