Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/AH/AH4 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/AH/AH4 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  117,260
 Normal Paired: 72,458 (61.79%)
 Chimeric Paired: 27,864 (23.76%)
 Chimeric Ambiguous: 10,463 (8.92%)
 Unmapped: 6,475 (5.52%)
 Ligation Motif Present: 93,516 (79.75%)
Alignable (Normal+Chimeric Paired): 100,322 (85.56%)
Unique Reads: 90,153 (76.88%)
PCR Duplicates: 9,358 (7.98%)
Optical Duplicates: 811 (0.69%)
Library Complexity Estimate: 495,371
Intra-fragment Reads: 5,566 (4.75% / 6.17%)
Below MAPQ Threshold: 10,717 (9.14% / 11.89%)
Hi-C Contacts: 73,870 (63.00% / 81.94%)
 Ligation Motif Present: 55,178  (47.06% / 61.20%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,612  (9.90% / 12.88%)
Intra-chromosomal: 62,258  (53.09% / 69.06%)
Short Range (<20Kb): 46,946  (40.04% / 52.07%)
Long Range (>20Kb): 15,312  (13.06% / 16.98%)