Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/21 -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  257,775
 Normal Paired: 101,532 (39.39%)
 Chimeric Paired: 3,202 (1.24%)
 Chimeric Ambiguous: 847 (0.33%)
 Unmapped: 152,194 (59.04%)
 Ligation Motif Present: 1,630 (0.63%)
Alignable (Normal+Chimeric Paired): 104,734 (40.63%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/21/aligned inter.txt
Intra-fragment Reads: 40,850 (15.85% / 42.01%)
Below MAPQ Threshold: 25,375 (9.84% / 26.10%)
Hi-C Contacts: 31,005 (12.03% / 31.89%)
 Ligation Motif Present: 1,204  (0.47% / 1.24%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 24%
Inter-chromosomal: 10,136  (3.93% / 10.42%)
Intra-chromosomal: 20,869  (8.10% / 21.46%)
Short Range (<20Kb): 14,113  (5.47% / 14.52%)
Long Range (>20Kb): 6,756  (2.62% / 6.95%)