Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/22 -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  2,030,344
 Normal Paired: 101,847 (5.02%)
 Chimeric Paired: 7,398 (0.36%)
 Chimeric Ambiguous: 2,689 (0.13%)
 Unmapped: 1,918,410 (94.49%)
 Ligation Motif Present: 20,122 (0.99%)
Alignable (Normal+Chimeric Paired): 109,245 (5.38%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/22/aligned inter.txt
Intra-fragment Reads: 12,446 (0.61% / 11.44%)
Below MAPQ Threshold: 23,741 (1.17% / 21.83%)
Hi-C Contacts: 72,585 (3.58% / 66.73%)
 Ligation Motif Present: 14,986  (0.74% / 13.78%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 17,879  (0.88% / 16.44%)
Intra-chromosomal: 54,706  (2.69% / 50.29%)
Short Range (<20Kb): 19,115  (0.94% / 17.57%)
Long Range (>20Kb): 35,591  (1.75% / 32.72%)