Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/22 -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  2,030,344
 Normal Paired: 101,847 (5.02%)
 Chimeric Paired: 7,398 (0.36%)
 Chimeric Ambiguous: 2,689 (0.13%)
 Unmapped: 1,918,410 (94.49%)
 Ligation Motif Present: 20,122 (0.99%)
Alignable (Normal+Chimeric Paired): 109,245 (5.38%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/22/aligned inter.txt
Intra-fragment Reads: 12,446 (0.61% / 11.44%)
Below MAPQ Threshold: 30,576 (1.51% / 28.11%)
Hi-C Contacts: 65,750 (3.24% / 60.45%)
 Ligation Motif Present: 13,757  (0.68% / 12.65%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 15,619  (0.77% / 14.36%)
Intra-chromosomal: 50,131  (2.47% / 46.09%)
Short Range (<20Kb): 17,870  (0.88% / 16.43%)
Long Range (>20Kb): 32,261  (1.59% / 29.66%)