Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/2 -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  3,015,529
 Normal Paired: 381,107 (12.64%)
 Chimeric Paired: 25,850 (0.86%)
 Chimeric Ambiguous: 9,693 (0.32%)
 Unmapped: 2,598,879 (86.18%)
 Ligation Motif Present: 230,766 (7.65%)
Alignable (Normal+Chimeric Paired): 406,957 (13.50%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/2/aligned inter.txt
Intra-fragment Reads: 16,926 (0.56% / 4.18%)
Below MAPQ Threshold: 83,253 (2.76% / 20.57%)
Hi-C Contacts: 304,630 (10.10% / 75.25%)
 Ligation Motif Present: 174,732  (5.79% / 43.16%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 66,514  (2.21% / 16.43%)
Intra-chromosomal: 238,116  (7.90% / 58.82%)
Short Range (<20Kb): 134,690  (4.47% / 33.27%)
Long Range (>20Kb): 103,425  (3.43% / 25.55%)