Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/3 -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  1,859,055
 Normal Paired: 82,847 (4.46%)
 Chimeric Paired: 6,197 (0.33%)
 Chimeric Ambiguous: 2,272 (0.12%)
 Unmapped: 1,767,739 (95.09%)
 Ligation Motif Present: 18,584 (1.00%)
Alignable (Normal+Chimeric Paired): 89,044 (4.79%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/3/aligned inter.txt
Intra-fragment Reads: 9,455 (0.51% / 10.64%)
Below MAPQ Threshold: 25,478 (1.37% / 28.68%)
Hi-C Contacts: 53,891 (2.90% / 60.67%)
 Ligation Motif Present: 12,437  (0.67% / 14.00%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 24% - 25% - 26%
Inter-chromosomal: 11,062  (0.60% / 12.45%)
Intra-chromosomal: 42,829  (2.30% / 48.22%)
Short Range (<20Kb): 15,009  (0.81% / 16.90%)
Long Range (>20Kb): 27,820  (1.50% / 31.32%)