Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/ckit/55 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/ckit/55 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  249,020
 Normal Paired: 101,334 (40.69%)
 Chimeric Paired: 107,915 (43.34%)
 Chimeric Ambiguous: 38,578 (15.49%)
 Unmapped: 1,193 (0.48%)
 Ligation Motif Present: 208,400 (83.69%)
Alignable (Normal+Chimeric Paired): 209,249 (84.03%)
Unique Reads: 208,763 (83.83%)
PCR Duplicates: 367 (0.15%)
Optical Duplicates: 119 (0.05%)
Library Complexity Estimate: 59,515,224
Intra-fragment Reads: 6,592 (2.65% / 3.16%)
Below MAPQ Threshold: 39,720 (15.95% / 19.03%)
Hi-C Contacts: 162,451 (65.24% / 77.82%)
 Ligation Motif Present: 99,619  (40.00% / 47.72%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 61,256  (24.60% / 29.34%)
Intra-chromosomal: 101,195  (40.64% / 48.47%)
Short Range (<20Kb): 50,024  (20.09% / 23.96%)
Long Range (>20Kb): 51,171  (20.55% / 24.51%)