Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.16" 2022-07-19; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/dreamworld/NGS_Data/20221025_P62-69/Result/P69 -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 30,431 Normal Paired: 21,591 (70.95%) Chimeric Paired: 6,662 (21.89%) Chimeric Ambiguous: 2,069 (6.80%) Unmapped: 109 (0.36%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 28,253 (92.84%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2022-10-25T13:48:38,485] [Globals.java:138] [main] Development mode is enabled Unique Reads: 28,216 (92.72%) PCR Duplicates: 3 (0.01%) Optical Duplicates: 34 (0.11%) Library Complexity Estimate: 132,709,253 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 2,991 (9.83% / 10.60%) Hi-C Contacts: 25,225 (82.89% / 89.40%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 3% - 90% - 3% - 3% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 78% Cis/all (FF and RR orient): 54.1% Inter-chromosomal: 2,517 (8.27% / 8.92%) Intra-chromosomal: 22,708 (74.62% / 80.48%) Short Range (<20,000bp): 20,517 (67.42% / 72.71%) Long Range (>20,000bp): 2,191 (7.20% / 7.77%)