## htsjdk.samtools.metrics.StringHeader
# MarkDuplicates --INPUT /dreamworld/ngs_data/NIPT/N32/IRs/N32.primary.bam --OUTPUT /dev/stdout --METRICS_FILE /dreamworld/ngs_data/NIPT/N32/N32.md_metrics.txt --REMOVE_DUPLICATES true --ASSUME_SORT_ORDER queryname --TMP_DIR /tmp/tmpilmy00dd --VERBOSITY ERROR --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --GA4GH_CLIENT_SECRETS client_secrets.json --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Sep 09 20:00:22 KRAT 2022

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
LIB-N32-001	2041	420198	6857	7231	722	71500	7567	0.170603	1190160

## HISTOGRAM	java.lang.Double
BIN	CoverageMult	all_sets	optical_sets	non_optical_sets
1.0	1.015294	287124	0	292573
2.0	1.728573	53038	7207	49271
3.0	2.229677	7367	171	6043
4.0	2.58172	1008	6	715
5.0	2.829043	132	0	79
6.0	3.002795	22	0	10
7.0	3.124863	2	0	3
8.0	3.210619	2	0	1
9.0	3.270866	0	0	0
10.0	3.313192	0	0	0
11.0	3.342927	2	0	2
12.0	3.363817	0	0	0
13.0	3.378493	0	0	0
14.0	3.388804	0	0	0
15.0	3.396047	0	0	0
16.0	3.401136	0	0	0
17.0	3.404711	0	0	0
18.0	3.407222	0	0	0
19.0	3.408987	0	0	0
20.0	3.410226	0	0	0
21.0	3.411097	1	0	1
22.0	3.411709	0	0	0
23.0	3.412139	0	0	0
24.0	3.412441	0	0	0
25.0	3.412653	0	0	0
26.0	3.412802	0	0	0
27.0	3.412907	0	0	0
28.0	3.41298	0	0	0
29.0	3.413032	0	0	0
30.0	3.413068	0	0	0
31.0	3.413094	0	0	0
32.0	3.413112	0	0	0
33.0	3.413124	0	0	0
34.0	3.413133	0	0	0
35.0	3.413139	0	0	0
36.0	3.413144	0	0	0
37.0	3.413147	0	0	0
38.0	3.413149	0	0	0
39.0	3.413151	0	0	0
40.0	3.413152	0	0	0
41.0	3.413152	0	0	0
42.0	3.413153	0	0	0
43.0	3.413153	0	0	0
44.0	3.413153	0	0	0
45.0	3.413154	0	0	0
46.0	3.413154	0	0	0
47.0	3.413154	0	0	0
48.0	3.413154	0	0	0
49.0	3.413154	0	0	0
50.0	3.413154	0	0	0
51.0	3.413154	0	0	0
52.0	3.413154	0	0	0
53.0	3.413154	0	0	0
54.0	3.413154	0	0	0
55.0	3.413154	0	0	0
56.0	3.413154	0	0	0
57.0	3.413154	0	0	0
58.0	3.413154	0	0	0
59.0	3.413154	0	0	0
60.0	3.413154	0	0	0
61.0	3.413154	0	0	0
62.0	3.413154	0	0	0
63.0	3.413154	0	0	0
64.0	3.413154	0	0	0
65.0	3.413154	0	0	0
66.0	3.413154	0	0	0
67.0	3.413154	0	0	0
68.0	3.413154	0	0	0
69.0	3.413154	0	0	0
70.0	3.413154	0	0	0
71.0	3.413154	0	0	0
72.0	3.413154	0	0	0
73.0	3.413154	0	0	0
74.0	3.413154	0	0	0
75.0	3.413154	0	0	0
76.0	3.413154	0	0	0
77.0	3.413154	0	0	0
78.0	3.413154	0	0	0
79.0	3.413154	0	0	0
80.0	3.413154	0	0	0
81.0	3.413154	0	0	0
82.0	3.413154	0	0	0
83.0	3.413154	0	0	0
84.0	3.413154	0	0	0
85.0	3.413154	0	0	0
86.0	3.413154	0	0	0
87.0	3.413154	0	0	0
88.0	3.413154	0	0	0
89.0	3.413154	0	0	0
90.0	3.413154	0	0	0
91.0	3.413154	0	0	0
92.0	3.413154	0	0	0
93.0	3.413154	0	0	0
94.0	3.413154	0	0	0
95.0	3.413154	0	0	0
96.0	3.413154	0	0	0
97.0	3.413154	0	0	0
98.0	3.413154	0	0	0
99.0	3.413154	0	0	0
100.0	3.413154	0	0	0