Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/AH/AH3 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/AH/AH3 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  90,062
 Normal Paired: 37,361 (41.48%)
 Chimeric Paired: 36,443 (40.46%)
 Chimeric Ambiguous: 13,932 (15.47%)
 Unmapped: 2,326 (2.58%)
 Ligation Motif Present: 74,157 (82.34%)
Alignable (Normal+Chimeric Paired): 73,804 (81.95%)
Unique Reads: 67,102 (74.51%)
PCR Duplicates: 6,171 (6.85%)
Optical Duplicates: 531 (0.59%)
Library Complexity Estimate: 410,229
Intra-fragment Reads: 2,217 (2.46% / 3.30%)
Below MAPQ Threshold: 9,770 (10.85% / 14.56%)
Hi-C Contacts: 55,115 (61.20% / 82.14%)
 Ligation Motif Present: 34,292  (38.08% / 51.10%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 24% - 25% - 25%
Inter-chromosomal: 21,480  (23.85% / 32.01%)
Intra-chromosomal: 33,635  (37.35% / 50.13%)
Short Range (<20Kb): 17,450  (19.38% / 26.01%)
Long Range (>20Kb): 16,185  (17.97% / 24.12%)