Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/NOVA/p -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates_out/NOVA/p -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  202,558,287
 Normal Paired: 115,570,605 (57.06%)
 Chimeric Paired: 57,558,175 (28.42%)
 Chimeric Ambiguous: 28,310,337 (13.98%)
 Unmapped: 1,119,170 (0.55%)
 Ligation Motif Present: 137,159,666 (67.71%)
Alignable (Normal+Chimeric Paired): 173,128,780 (85.47%)
Unique Reads: 139,093,361 (68.67%)
PCR Duplicates: 32,601,655 (16.09%)
Optical Duplicates: 1,433,764 (0.71%)
Library Complexity Estimate: 392,858,349
Intra-fragment Reads: 20,050,654 (9.90% / 14.42%)
Below MAPQ Threshold: 19,344,011 (9.55% / 13.91%)
Hi-C Contacts: 99,698,696 (49.22% / 71.68%)
 Ligation Motif Present: 61,976,006  (30.60% / 44.56%)
 3' Bias (Long Range): 71% - 29%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 49,260,309  (24.32% / 35.42%)
Intra-chromosomal: 50,438,387  (24.90% / 36.26%)
Short Range (<20Kb): 43,193,579  (21.32% / 31.05%)
Long Range (>20Kb): 7,244,664  (3.58% / 5.21%)