Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/VL9 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/VL9 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  663,563
 Normal Paired: 285,867 (43.08%)
 Chimeric Paired: 285,299 (43.00%)
 Chimeric Ambiguous: 89,306 (13.46%)
 Unmapped: 3,091 (0.47%)
 Ligation Motif Present: 320,163 (48.25%)
Alignable (Normal+Chimeric Paired): 571,166 (86.08%)
Unique Reads: 565,741 (85.26%)
PCR Duplicates: 4,770 (0.72%)
Optical Duplicates: 655 (0.10%)
Library Complexity Estimate: 33,927,257
Intra-fragment Reads: 41,514 (6.26% / 7.34%)
Below MAPQ Threshold: 72,852 (10.98% / 12.88%)
Hi-C Contacts: 451,375 (68.02% / 79.78%)
 Ligation Motif Present: 161,423  (24.33% / 28.53%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 73,677  (11.10% / 13.02%)
Intra-chromosomal: 377,698  (56.92% / 66.76%)
Short Range (<20Kb): 141,106  (21.26% / 24.94%)
Long Range (>20Kb): 236,589  (35.65% / 41.82%)