Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/FM/1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates_out/FM/1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  1,761,284
 Normal Paired: 1,555,830 (88.33%)
 Chimeric Paired: 106,489 (6.05%)
 Chimeric Ambiguous: 56,497 (3.21%)
 Unmapped: 42,468 (2.41%)
 Ligation Motif Present: 1,129,017 (64.10%)
Alignable (Normal+Chimeric Paired): 1,662,319 (94.38%)
Unique Reads: 1,557,242 (88.42%)
PCR Duplicates: 100,281 (5.69%)
Optical Duplicates: 4,796 (0.27%)
Library Complexity Estimate: 13,140,153
Intra-fragment Reads: 21,563 (1.22% / 1.38%)
Below MAPQ Threshold: 335,569 (19.05% / 21.55%)
Hi-C Contacts: 1,200,110 (68.14% / 77.07%)
 Ligation Motif Present: 744,484  (42.27% / 47.81%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 385,772  (21.90% / 24.77%)
Intra-chromosomal: 814,338  (46.24% / 52.29%)
Short Range (<20Kb): 496,748  (28.20% / 31.90%)
Long Range (>20Kb): 317,584  (18.03% / 20.39%)