Experiment description: Juicer version 1.5.6;12 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 12 -d /mnt/storage/home/manuriddinov/scratch/fastq/Mlig3/P2 -p /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3R.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3R.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3R.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/P2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  2,808,200
 Normal Paired: 1,542,474 (54.93%)
 Chimeric Paired: 565,671 (20.14%)
 Chimeric Ambiguous: 567,218 (20.20%)
 Unmapped: 132,837 (4.73%)
 Ligation Motif Present: 1,437,071 (51.17%)
Alignable (Normal+Chimeric Paired): 2,108,145 (75.07%)
Unique Reads: 1,854,838 (66.05%)
PCR Duplicates: 231,966 (8.26%)
Optical Duplicates: 21,341 (0.76%)
Library Complexity Estimate: 8,677,300
Intra-fragment Reads: 226,163 (8.05% / 12.19%)
Below MAPQ Threshold: 1,304,744 (46.46% / 70.34%)
Hi-C Contacts: 323,931 (11.54% / 17.46%)
 Ligation Motif Present: 144,790  (5.16% / 7.81%)
 3' Bias (Long Range): 64% - 36%
 Pair Type %(L-I-O-R): 24% - 26% - 27% - 23%
Inter-chromosomal: 172,053  (6.13% / 9.28%)
Intra-chromosomal: 151,878  (5.41% / 8.19%)
Short Range (<20Kb): 144,802  (5.16% / 7.81%)
Long Range (>20Kb): 7,076  (0.25% / 0.38%)