Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage/nyt/Projects/Juicer-Out/2023-05-18_BGI/Paul/BD1_unc -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  23,305,722
 Normal Paired: 13,271,229 (56.94%)
 Chimeric Paired: 8,684,916 (37.27%)
 Chimeric Ambiguous: 1,183,879 (5.08%)
 Unmapped: 165,698 (0.71%)
 Ligation Motif Present: 10,578,428 (45.39%)
Alignable (Normal+Chimeric Paired): 21,956,145 (94.21%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-05-24T03:25:32,830]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 11,697,354 (50.19%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 10,258,791 (44.02%)
Library Complexity Estimate: 0
Intra-fragment Reads: 3,250,997 (13.95% / 27.79%)
Below MAPQ Threshold: 1,474,114 (6.33% / 12.60%)
Hi-C Contacts: 6,972,243 (29.92% / 59.61%)
 Ligation Motif Present: 3,994,545  (17.14% / 34.15%)
 3' Bias (Long Range): 72% - 28%
 Pair Type intra chrom %(L-I-O-R): 10% - 69% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 34%
 Cis/all (FF and RR orient): 36.1%
Inter-chromosomal: 2,921,454  (12.54% / 24.98%)
Intra-chromosomal: 4,050,789  (17.38% / 34.63%)
Short Range (<20,000bp): 2,551,228  (10.95% / 21.81%)
Long Range (>20,000bp): 1,499,561  (6.43% / 12.82%)