Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage/nyt/Projects/Juicer-Out/2023-05-18_BGI/Paul/CB1_unc -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  42,114,499
 Normal Paired: 17,040,468 (40.46%)
 Chimeric Paired: 19,414,342 (46.10%)
 Chimeric Ambiguous: 5,351,272 (12.71%)
 Unmapped: 308,417 (0.73%)
 Ligation Motif Present: 33,849,774 (80.38%)
Alignable (Normal+Chimeric Paired): 36,454,810 (86.56%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-05-23T20:25:40,557]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 21,444,768 (50.92%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 15,010,042 (35.64%)
Library Complexity Estimate: 0
Intra-fragment Reads: 3,422,130 (8.13% / 15.96%)
Below MAPQ Threshold: 3,073,561 (7.30% / 14.33%)
Hi-C Contacts: 14,949,077 (35.50% / 69.71%)
 Ligation Motif Present: 12,482,348  (29.64% / 58.21%)
 3' Bias (Long Range): 72% - 28%
 Pair Type intra chrom %(L-I-O-R): 16% - 53% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 22%
 Cis/all (FF and RR orient): 48.4%
Inter-chromosomal: 5,992,966  (14.23% / 27.95%)
Intra-chromosomal: 8,956,111  (21.27% / 41.76%)
Short Range (<20,000bp): 3,868,442  (9.19% / 18.04%)
Long Range (>20,000bp): 5,087,669  (12.08% / 23.72%)