Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage/nyt/Projects/Juicer-Out/2023-05-18_BGI/Paul/CB1_wt -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  46,843,361
 Normal Paired: 17,169,186 (36.65%)
 Chimeric Paired: 23,582,648 (50.34%)
 Chimeric Ambiguous: 5,795,697 (12.37%)
 Unmapped: 295,830 (0.63%)
 Ligation Motif Present: 40,331,695 (86.10%)
Alignable (Normal+Chimeric Paired): 40,751,834 (87.00%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-05-24T01:28:13,260]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 24,331,173 (51.94%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 16,420,661 (35.05%)
Library Complexity Estimate: 0
Intra-fragment Reads: 3,149,211 (6.72% / 12.94%)
Below MAPQ Threshold: 3,645,120 (7.78% / 14.98%)
Hi-C Contacts: 17,536,842 (37.44% / 72.08%)
 Ligation Motif Present: 15,265,741  (32.59% / 62.74%)
 3' Bias (Long Range): 73% - 27%
 Pair Type intra chrom %(L-I-O-R): 15% - 55% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 20%
 Cis/all (FF and RR orient): 38.3%
Inter-chromosomal: 8,656,809  (18.48% / 35.58%)
Intra-chromosomal: 8,880,033  (18.96% / 36.50%)
Short Range (<20,000bp): 3,867,920  (8.26% / 15.90%)
Long Range (>20,000bp): 5,012,113  (10.70% / 20.60%)