Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage/nyt/Projects/Juicer-Out/2023-05-18_BGI/Paul/CB2_unc -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  667
 Normal Paired: 380 (56.97%)
 Chimeric Paired: 235 (35.23%)
 Chimeric Ambiguous: 48 (7.20%)
 Unmapped: 4 (0.60%)
 Ligation Motif Present: 501 (75.11%)
Alignable (Normal+Chimeric Paired): 615 (92.20%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-05-24T02:15:07,611]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 345 (51.72%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 270 (40.48%)
Library Complexity Estimate: 0
Intra-fragment Reads: 74 (11.09% / 21.45%)
Below MAPQ Threshold: 42 (6.30% / 12.17%)
Hi-C Contacts: 229 (34.33% / 66.38%)
 Ligation Motif Present: 195  (29.24% / 56.52%)
 3' Bias (Long Range): 70% - 30%
 Pair Type intra chrom %(L-I-O-R): 14% - 61% - 14% - 11%
 Pair Type inter chrom %(L-I-O-R): 27% - 32% - 15% - 25%
 DE: 37%
 Cis/all (FF and RR orient): 58.1%
Inter-chromosomal: 59  (8.85% / 17.10%)
Intra-chromosomal: 170  (25.49% / 49.28%)
Short Range (<20,000bp): 101  (15.14% / 29.28%)
Long Range (>20,000bp): 69  (10.34% / 20.00%)