Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage/nyt/Projects/Juicer-Out/2023-05-18_BGI/Paul/kid_unc3 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  28,109,032
 Normal Paired: 14,538,923 (51.72%)
 Chimeric Paired: 11,793,500 (41.96%)
 Chimeric Ambiguous: 1,617,829 (5.76%)
 Unmapped: 158,780 (0.56%)
 Ligation Motif Present: 17,922,491 (63.76%)
Alignable (Normal+Chimeric Paired): 26,332,423 (93.68%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-05-19T01:35:53,078]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 13,958,729 (49.66%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 12,373,694 (44.02%)
Library Complexity Estimate: 0
Intra-fragment Reads: 3,129,669 (11.13% / 22.42%)
Below MAPQ Threshold: 1,397,188 (4.97% / 10.01%)
Hi-C Contacts: 9,431,872 (33.55% / 67.57%)
 Ligation Motif Present: 7,167,562  (25.50% / 51.35%)
 3' Bias (Long Range): 67% - 33%
 Pair Type intra chrom %(L-I-O-R): 17% - 50% - 17% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 25%
 Cis/all (FF and RR orient): 65.7%
Inter-chromosomal: 2,432,305  (8.65% / 17.42%)
Intra-chromosomal: 6,999,567  (24.90% / 50.14%)
Short Range (<20,000bp): 3,314,029  (11.79% / 23.74%)
Long Range (>20,000bp): 3,685,538  (13.11% / 26.40%)