Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage/nyt/Projects/Juicer-Out/2023-05-18_BGI/Paul/kid_unc3 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  28,109,032
 Normal Paired: 14,538,923 (51.72%)
 Chimeric Paired: 11,793,500 (41.96%)
 Chimeric Ambiguous: 1,617,829 (5.76%)
 Unmapped: 158,780 (0.56%)
 Ligation Motif Present: 17,922,491 (63.76%)
Alignable (Normal+Chimeric Paired): 26,332,423 (93.68%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-05-19T01:35:53,078]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 13,958,729 (49.66%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 12,373,694 (44.02%)
Library Complexity Estimate: 0
Intra-fragment Reads: 3,129,669 (11.13% / 22.42%)
Below MAPQ Threshold: 1,834,283 (6.53% / 13.14%)
Hi-C Contacts: 8,994,777 (32.00% / 64.44%)
 Ligation Motif Present: 6,820,297  (24.26% / 48.86%)
 3' Bias (Long Range): 68% - 32%
 Pair Type intra chrom %(L-I-O-R): 16% - 51% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 26%
 Cis/all (FF and RR orient): 66.3%
Inter-chromosomal: 2,252,934  (8.01% / 16.14%)
Intra-chromosomal: 6,741,843  (23.98% / 48.30%)
Short Range (<20,000bp): 3,248,639  (11.56% / 23.27%)
Long Range (>20,000bp): 3,493,204  (12.43% / 25.03%)