Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage/nyt/Projects/Juicer-Out/2023-05-18_BGI/Paul/kid_wt3 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  39,516,587
 Normal Paired: 18,518,983 (46.86%)
 Chimeric Paired: 17,499,082 (44.28%)
 Chimeric Ambiguous: 3,288,156 (8.32%)
 Unmapped: 210,366 (0.53%)
 Ligation Motif Present: 28,536,132 (72.21%)
Alignable (Normal+Chimeric Paired): 36,018,065 (91.15%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-05-18T22:51:46,417]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 19,475,465 (49.28%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 16,542,600 (41.86%)
Library Complexity Estimate: 0
Intra-fragment Reads: 3,709,710 (9.39% / 19.05%)
Below MAPQ Threshold: 2,193,999 (5.55% / 11.27%)
Hi-C Contacts: 13,571,756 (34.34% / 69.69%)
 Ligation Motif Present: 10,888,460  (27.55% / 55.91%)
 3' Bias (Long Range): 67% - 33%
 Pair Type intra chrom %(L-I-O-R): 17% - 48% - 17% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 23%
 Cis/all (FF and RR orient): 65.4%
Inter-chromosomal: 3,624,781  (9.17% / 18.61%)
Intra-chromosomal: 9,946,975  (25.17% / 51.07%)
Short Range (<20,000bp): 4,170,123  (10.55% / 21.41%)
Long Range (>20,000bp): 5,776,852  (14.62% / 29.66%)