Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage/nyt/Projects/Juicer-Out/2023-05-18_BGI/Paul/kid_wt4 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  21,512,951
 Normal Paired: 11,129,515 (51.73%)
 Chimeric Paired: 8,828,909 (41.04%)
 Chimeric Ambiguous: 1,453,753 (6.76%)
 Unmapped: 100,774 (0.47%)
 Ligation Motif Present: 14,297,677 (66.46%)
Alignable (Normal+Chimeric Paired): 19,958,424 (92.77%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-05-19T00:13:54,913]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 11,127,097 (51.72%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 8,831,327 (41.05%)
Library Complexity Estimate: 0
Intra-fragment Reads: 2,376,791 (11.05% / 21.36%)
Below MAPQ Threshold: 1,140,093 (5.30% / 10.25%)
Hi-C Contacts: 7,610,213 (35.38% / 68.39%)
 Ligation Motif Present: 5,868,233  (27.28% / 52.74%)
 3' Bias (Long Range): 67% - 33%
 Pair Type intra chrom %(L-I-O-R): 16% - 51% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 26%
 Cis/all (FF and RR orient): 65.3%
Inter-chromosomal: 1,958,431  (9.10% / 17.60%)
Intra-chromosomal: 5,651,782  (26.27% / 50.79%)
Short Range (<20,000bp): 2,585,592  (12.02% / 23.24%)
Long Range (>20,000bp): 3,066,190  (14.25% / 27.56%)