Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 24 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workapr/Juicer-Out/2025-04-24-BGI/unc5b_mm10/d4_liv -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 24                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  48,985,795
 Normal Paired: 30,447,878 (62.16%)
 Chimeric Paired: 13,096,193 (26.73%)
 Chimeric Ambiguous: 4,954,157 (10.11%)
 Unmapped: 487,567 (1.00%)
 Ligation Motif Present: 27,250,840 (55.63%)
Alignable (Normal+Chimeric Paired): 43,544,071 (88.89%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-05-15T15:31:44,555]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 31,981,350 (65.29%)
PCR Duplicates: 11,562,721 (23.60%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 66,723,213
Intra-fragment Reads: 10,528,302 (21.49% / 32.92%)
Below MAPQ Threshold: 7,006,859 (14.30% / 21.91%)
Hi-C Contacts: 24,974,491 (50.98% / 78.09%)
 Ligation Motif Present: 13,677,829  (27.92% / 42.77%)
 3' Bias (Long Range): 57% - 43%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 64%
 Cis/all (FF and RR orient): 67.5%
Inter-chromosomal: 2,885,916  (5.89% / 9.02%)
Intra-chromosomal: 22,088,575  (45.09% / 69.07%)
Short Range (<20,000bp): 17,796,590  (36.33% / 55.65%)
Long Range (>20,000bp): 4,291,985  (8.76% / 13.42%)