Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 24 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workapr/Juicer-Out/2025-04-24-BGI/unc5b_mm10/wt_kid -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 24                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  103,264,239
 Normal Paired: 73,375,044 (71.06%)
 Chimeric Paired: 21,912,338 (21.22%)
 Chimeric Ambiguous: 7,704,789 (7.46%)
 Unmapped: 272,068 (0.26%)
 Ligation Motif Present: 37,326,836 (36.15%)
Alignable (Normal+Chimeric Paired): 95,287,382 (92.28%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-05-18T15:55:24,418]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 65,357,342 (63.29%)
PCR Duplicates: 29,930,040 (28.98%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 117,901,712
Intra-fragment Reads: 25,827,552 (25.01% / 39.52%)
Below MAPQ Threshold: 10,741,904 (10.40% / 16.44%)
Hi-C Contacts: 54,615,438 (52.89% / 83.56%)
 Ligation Motif Present: 21,127,827  (20.46% / 32.33%)
 3' Bias (Long Range): 53% - 47%
 Pair Type intra chrom %(L-I-O-R): 6% - 83% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 66%
 Cis/all (FF and RR orient): 56.0%
Inter-chromosomal: 8,158,699  (7.90% / 12.48%)
Intra-chromosomal: 46,456,739  (44.99% / 71.08%)
Short Range (<20,000bp): 38,596,209  (37.38% / 59.05%)
Long Range (>20,000bp): 7,860,530  (7.61% / 12.03%)