Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 24 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workapr/Juicer-Out/2025-04-24-BGI/unc5b_mm10/wt_kid -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 24                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  103,264,239
 Normal Paired: 73,375,044 (71.06%)
 Chimeric Paired: 21,912,338 (21.22%)
 Chimeric Ambiguous: 7,704,789 (7.46%)
 Unmapped: 272,068 (0.26%)
 Ligation Motif Present: 37,326,836 (36.15%)
Alignable (Normal+Chimeric Paired): 95,287,382 (92.28%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-05-18T15:55:24,418]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 65,357,342 (63.29%)
PCR Duplicates: 29,930,040 (28.98%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 117,901,712
Intra-fragment Reads: 25,827,552 (25.01% / 39.52%)
Below MAPQ Threshold: 12,876,877 (12.47% / 19.70%)
Hi-C Contacts: 52,480,465 (50.82% / 80.30%)
 Ligation Motif Present: 19,674,633  (19.05% / 30.10%)
 3' Bias (Long Range): 53% - 47%
 Pair Type intra chrom %(L-I-O-R): 5% - 84% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 68%
 Cis/all (FF and RR orient): 57.0%
Inter-chromosomal: 7,119,751  (6.89% / 10.89%)
Intra-chromosomal: 45,360,714  (43.93% / 69.40%)
Short Range (<20,000bp): 38,281,540  (37.07% / 58.57%)
Long Range (>20,000bp): 7,079,174  (6.86% / 10.83%)