Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 24 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workapr/Juicer-Out/2025-04-24-BGI/unc5b_mm10/wt_liv -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 24 Sequenced Read Pairs: 132,927,242 Normal Paired: 74,825,307 (56.29%) Chimeric Paired: 40,677,639 (30.60%) Chimeric Ambiguous: 17,231,264 (12.96%) Unmapped: 193,032 (0.15%) Ligation Motif Present: 86,718,634 (65.24%) Alignable (Normal+Chimeric Paired): 115,502,946 (86.89%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2025-05-16T06:01:56,519] [Globals.java:138] [main] Development mode is enabled Unique Reads: 82,684,142 (62.20%) PCR Duplicates: 32,818,804 (24.69%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 162,584,294 Intra-fragment Reads: 21,666,107 (16.30% / 26.20%) Below MAPQ Threshold: 15,324,528 (11.53% / 18.53%) Hi-C Contacts: 67,359,614 (50.67% / 81.47%) Ligation Motif Present: 46,055,373 (34.65% / 55.70%) 3' Bias (Long Range): 58% - 42% Pair Type intra chrom %(L-I-O-R): 9% - 74% - 9% - 9% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 51% Cis/all (FF and RR orient): 57.0% Inter-chromosomal: 14,092,987 (10.60% / 17.04%) Intra-chromosomal: 53,266,627 (40.07% / 64.42%) Short Range (<20,000bp): 38,318,628 (28.83% / 46.34%) Long Range (>20,000bp): 14,947,999 (11.25% / 18.08%)