Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 24 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workapr/Juicer-Out/2025-04-24-BGI/unc5b_mm10/wt_liv -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workapr/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 24                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  132,927,242
 Normal Paired: 74,825,307 (56.29%)
 Chimeric Paired: 40,677,639 (30.60%)
 Chimeric Ambiguous: 17,231,264 (12.96%)
 Unmapped: 193,032 (0.15%)
 Ligation Motif Present: 86,718,634 (65.24%)
Alignable (Normal+Chimeric Paired): 115,502,946 (86.89%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-05-16T06:01:56,519]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 82,684,142 (62.20%)
PCR Duplicates: 32,818,804 (24.69%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 162,584,294
Intra-fragment Reads: 21,666,107 (16.30% / 26.20%)
Below MAPQ Threshold: 19,259,586 (14.49% / 23.29%)
Hi-C Contacts: 63,424,556 (47.71% / 76.71%)
 Ligation Motif Present: 42,679,436  (32.11% / 51.62%)
 3' Bias (Long Range): 58% - 42%
 Pair Type intra chrom %(L-I-O-R): 8% - 75% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 54%
 Cis/all (FF and RR orient): 58.2%
Inter-chromosomal: 12,152,958  (9.14% / 14.70%)
Intra-chromosomal: 51,271,598  (38.57% / 62.01%)
Short Range (<20,000bp): 37,863,952  (28.48% / 45.79%)
Long Range (>20,000bp): 13,407,646  (10.09% / 16.22%)