Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2023-01-08_BGI/Paul/BD1_unc -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  544,493
 Normal Paired: 312,117 (57.32%)
 Chimeric Paired: 183,255 (33.66%)
 Chimeric Ambiguous: 43,439 (7.98%)
 Unmapped: 5,682 (1.04%)
 Ligation Motif Present: 240,124 (44.10%)
Alignable (Normal+Chimeric Paired): 495,372 (90.98%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-01-20T16:13:55,794]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 488,075 (89.64%)
PCR Duplicates: 7,297 (1.34%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 16,649,145
Intra-fragment Reads: 153,133 (28.12% / 31.37%)
Below MAPQ Threshold: 73,346 (13.47% / 15.03%)
Hi-C Contacts: 261,596 (48.04% / 53.60%)
 Ligation Motif Present: 146,814  (26.96% / 30.08%)
 3' Bias (Long Range): 72% - 28%
 Pair Type intra chrom %(L-I-O-R): 10% - 70% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 36%
 Cis/all (FF and RR orient): 37.6%
Inter-chromosomal: 104,380  (19.17% / 21.39%)
Intra-chromosomal: 157,216  (28.87% / 32.21%)
Short Range (<20,000bp): 99,528  (18.28% / 20.39%)
Long Range (>20,000bp): 57,688  (10.59% / 11.82%)