Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2023-01-08_BGI/Paul/CB2_unc -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  936,523
 Normal Paired: 476,368 (50.87%)
 Chimeric Paired: 310,806 (33.19%)
 Chimeric Ambiguous: 135,799 (14.50%)
 Unmapped: 13,550 (1.45%)
 Ligation Motif Present: 718,387 (76.71%)
Alignable (Normal+Chimeric Paired): 787,174 (84.05%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-01-20T16:18:44,903]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 779,555 (83.24%)
PCR Duplicates: 7,619 (0.81%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 40,401,503
Intra-fragment Reads: 179,406 (19.16% / 23.01%)
Below MAPQ Threshold: 93,991 (10.04% / 12.06%)
Hi-C Contacts: 506,158 (54.05% / 64.93%)
 Ligation Motif Present: 413,313  (44.13% / 53.02%)
 3' Bias (Long Range): 69% - 31%
 Pair Type intra chrom %(L-I-O-R): 13% - 62% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 32%
 Cis/all (FF and RR orient): 47.8%
Inter-chromosomal: 180,290  (19.25% / 23.13%)
Intra-chromosomal: 325,868  (34.80% / 41.80%)
Short Range (<20,000bp): 178,344  (19.04% / 22.88%)
Long Range (>20,000bp): 147,524  (15.75% / 18.92%)