Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2023-01-08_BGI/Paul/CB2_wt -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  692,962
 Normal Paired: 211,986 (30.59%)
 Chimeric Paired: 249,776 (36.04%)
 Chimeric Ambiguous: 181,831 (26.24%)
 Unmapped: 49,369 (7.12%)
 Ligation Motif Present: 526,861 (76.03%)
Alignable (Normal+Chimeric Paired): 461,762 (66.64%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-01-20T16:23:42,455]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 455,024 (65.66%)
PCR Duplicates: 6,738 (0.97%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 15,668,212
Intra-fragment Reads: 82,734 (11.94% / 18.18%)
Below MAPQ Threshold: 77,685 (11.21% / 17.07%)
Hi-C Contacts: 294,605 (42.51% / 64.74%)
 Ligation Motif Present: 233,238  (33.66% / 51.26%)
 3' Bias (Long Range): 68% - 32%
 Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 15%
 Cis/all (FF and RR orient): 16.0%
Inter-chromosomal: 211,124  (30.47% / 46.40%)
Intra-chromosomal: 83,481  (12.05% / 18.35%)
Short Range (<20,000bp): 45,155  (6.52% / 9.92%)
Long Range (>20,000bp): 38,326  (5.53% / 8.42%)