Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2023-01-08_BGI/Paul/CB2_wt -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  692,962
 Normal Paired: 211,986 (30.59%)
 Chimeric Paired: 249,776 (36.04%)
 Chimeric Ambiguous: 181,831 (26.24%)
 Unmapped: 49,369 (7.12%)
 Ligation Motif Present: 526,861 (76.03%)
Alignable (Normal+Chimeric Paired): 461,762 (66.64%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-01-20T16:23:42,455]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 455,024 (65.66%)
PCR Duplicates: 6,738 (0.97%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 15,668,212
Intra-fragment Reads: 82,734 (11.94% / 18.18%)
Below MAPQ Threshold: 109,191 (15.76% / 24.00%)
Hi-C Contacts: 263,099 (37.97% / 57.82%)
 Ligation Motif Present: 209,331  (30.21% / 46.00%)
 3' Bias (Long Range): 70% - 30%
 Pair Type intra chrom %(L-I-O-R): 11% - 66% - 11% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 16%
 Cis/all (FF and RR orient): 16.4%
Inter-chromosomal: 184,433  (26.62% / 40.53%)
Intra-chromosomal: 78,666  (11.35% / 17.29%)
Short Range (<20,000bp): 44,058  (6.36% / 9.68%)
Long Range (>20,000bp): 34,608  (4.99% / 7.61%)