Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2023-01-08_BGI/Paul/OB1_unc -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  1,811,739
 Normal Paired: 702,965 (38.80%)
 Chimeric Paired: 798,835 (44.09%)
 Chimeric Ambiguous: 290,575 (16.04%)
 Unmapped: 19,364 (1.07%)
 Ligation Motif Present: 1,552,149 (85.67%)
Alignable (Normal+Chimeric Paired): 1,501,800 (82.89%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-01-20T16:30:58,623]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 1,486,928 (82.07%)
PCR Duplicates: 14,872 (0.82%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 75,325,735
Intra-fragment Reads: 247,733 (13.67% / 16.66%)
Below MAPQ Threshold: 181,987 (10.04% / 12.24%)
Hi-C Contacts: 1,057,208 (58.35% / 71.10%)
 Ligation Motif Present: 936,262  (51.68% / 62.97%)
 3' Bias (Long Range): 69% - 31%
 Pair Type intra chrom %(L-I-O-R): 18% - 48% - 17% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 21%
 Cis/all (FF and RR orient): 62.1%
Inter-chromosomal: 315,996  (17.44% / 21.25%)
Intra-chromosomal: 741,212  (40.91% / 49.85%)
Short Range (<20,000bp): 302,822  (16.71% / 20.37%)
Long Range (>20,000bp): 438,390  (24.20% / 29.48%)