Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2023-01-08_BGI/Paul/OB2_unc -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 793,656 Normal Paired: 235,274 (29.64%) Chimeric Paired: 268,312 (33.81%) Chimeric Ambiguous: 222,110 (27.99%) Unmapped: 67,960 (8.56%) Ligation Motif Present: 623,754 (78.59%) Alignable (Normal+Chimeric Paired): 503,586 (63.45%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2023-01-20T16:36:59,251] [Globals.java:138] [main] Development mode is enabled Unique Reads: 496,649 (62.58%) PCR Duplicates: 6,937 (0.87%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 18,110,462 Intra-fragment Reads: 93,104 (11.73% / 18.75%) Below MAPQ Threshold: 135,656 (17.09% / 27.31%) Hi-C Contacts: 267,889 (33.75% / 53.94%) Ligation Motif Present: 222,003 (27.97% / 44.70%) 3' Bias (Long Range): 68% - 32% Pair Type intra chrom %(L-I-O-R): 8% - 77% - 8% - 7% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 17% Cis/all (FF and RR orient): 8.6% Inter-chromosomal: 203,383 (25.63% / 40.95%) Intra-chromosomal: 64,506 (8.13% / 12.99%) Short Range (<20,000bp): 45,558 (5.74% / 9.17%) Long Range (>20,000bp): 18,948 (2.39% / 3.82%)