Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/d2cb1 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  187,246
 Normal Paired: 118,110 (63.08%)
 Chimeric Paired: 52,551 (28.07%)
 Chimeric Ambiguous: 15,700 (8.38%)
 Unmapped: 885 (0.47%)
 Ligation Motif Present: 111,301 (59.44%)
Alignable (Normal+Chimeric Paired): 170,661 (91.14%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T12:55:19,819]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 169,032 (90.27%)
PCR Duplicates: 1,156 (0.62%)
Optical Duplicates: 473 (0.25%)
Library Complexity Estimate: 12,470,868
Intra-fragment Reads: 50,297 (26.86% / 29.76%)
Below MAPQ Threshold: 21,101 (11.27% / 12.48%)
Hi-C Contacts: 147,931 (79.00% / 87.52%)
 Ligation Motif Present: 81,991  (43.79% / 48.51%)
 3' Bias (Long Range): 56% - 44%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 62%
 Cis/all (FF and RR orient): 52.6%
Inter-chromosomal: 26,823  (14.33% / 15.87%)
Intra-chromosomal: 121,108  (64.68% / 71.65%)
Short Range (<20,000bp): 96,350  (51.46% / 57.00%)
Long Range (>20,000bp): 24,758  (13.22% / 14.65%)