Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/d2cb2 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  229,367
 Normal Paired: 134,996 (58.86%)
 Chimeric Paired: 72,305 (31.52%)
 Chimeric Ambiguous: 21,297 (9.29%)
 Unmapped: 769 (0.34%)
 Ligation Motif Present: 152,793 (66.62%)
Alignable (Normal+Chimeric Paired): 207,301 (90.38%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T12:55:37,823]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 205,265 (89.49%)
PCR Duplicates: 1,366 (0.60%)
Optical Duplicates: 670 (0.29%)
Library Complexity Estimate: 15,559,293
Intra-fragment Reads: 56,886 (24.80% / 27.71%)
Below MAPQ Threshold: 25,324 (11.04% / 12.34%)
Hi-C Contacts: 179,941 (78.45% / 87.66%)
 Ligation Motif Present: 113,557  (49.51% / 55.32%)
 3' Bias (Long Range): 58% - 42%
 Pair Type intra chrom %(L-I-O-R): 7% - 78% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 54.9%
Inter-chromosomal: 34,270  (14.94% / 16.70%)
Intra-chromosomal: 145,671  (63.51% / 70.97%)
Short Range (<20,000bp): 111,210  (48.49% / 54.18%)
Long Range (>20,000bp): 34,461  (15.02% / 16.79%)