Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/d2kid1 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  507,444
 Normal Paired: 354,415 (69.84%)
 Chimeric Paired: 113,727 (22.41%)
 Chimeric Ambiguous: 37,110 (7.31%)
 Unmapped: 2,192 (0.43%)
 Ligation Motif Present: 121,448 (23.93%)
Alignable (Normal+Chimeric Paired): 468,142 (92.25%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T13:30:36,369]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 451,872 (89.05%)
PCR Duplicates: 14,421 (2.84%)
Optical Duplicates: 1,849 (0.36%)
Library Complexity Estimate: 7,382,384
Intra-fragment Reads: 213,025 (41.98% / 47.14%)
Below MAPQ Threshold: 52,010 (10.25% / 11.51%)
Hi-C Contacts: 399,862 (78.80% / 88.49%)
 Ligation Motif Present: 87,758  (17.29% / 19.42%)
 3' Bias (Long Range): 52% - 48%
 Pair Type intra chrom %(L-I-O-R): 5% - 86% - 5% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 71%
 Cis/all (FF and RR orient): 52.3%
Inter-chromosomal: 55,804  (11.00% / 12.35%)
Intra-chromosomal: 344,058  (67.80% / 76.14%)
Short Range (<20,000bp): 296,842  (58.50% / 65.69%)
Long Range (>20,000bp): 47,216  (9.30% / 10.45%)