Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/d2kid2 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  474,964
 Normal Paired: 351,570 (74.02%)
 Chimeric Paired: 92,852 (19.55%)
 Chimeric Ambiguous: 29,098 (6.13%)
 Unmapped: 1,444 (0.30%)
 Ligation Motif Present: 94,421 (19.88%)
Alignable (Normal+Chimeric Paired): 444,422 (93.57%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T12:56:47,855]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 430,465 (90.63%)
PCR Duplicates: 12,607 (2.65%)
Optical Duplicates: 1,350 (0.28%)
Library Complexity Estimate: 7,637,462
Intra-fragment Reads: 211,376 (44.50% / 49.10%)
Below MAPQ Threshold: 48,543 (10.22% / 11.28%)
Hi-C Contacts: 381,922 (80.41% / 88.72%)
 Ligation Motif Present: 68,544  (14.43% / 15.92%)
 3' Bias (Long Range): 50% - 50%
 Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 75%
 Cis/all (FF and RR orient): 51.3%
Inter-chromosomal: 46,522  (9.79% / 10.81%)
Intra-chromosomal: 335,400  (70.62% / 77.92%)
Short Range (<20,000bp): 296,866  (62.50% / 68.96%)
Long Range (>20,000bp): 38,534  (8.11% / 8.95%)