Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/d2liv1 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  245,001
 Normal Paired: 149,222 (60.91%)
 Chimeric Paired: 72,771 (29.70%)
 Chimeric Ambiguous: 21,523 (8.78%)
 Unmapped: 1,485 (0.61%)
 Ligation Motif Present: 151,680 (61.91%)
Alignable (Normal+Chimeric Paired): 221,993 (90.61%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T12:55:44,660]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 219,660 (89.66%)
PCR Duplicates: 1,695 (0.69%)
Optical Duplicates: 638 (0.26%)
Library Complexity Estimate: 14,379,818
Intra-fragment Reads: 68,104 (27.80% / 31.00%)
Below MAPQ Threshold: 27,692 (11.30% / 12.61%)
Hi-C Contacts: 191,968 (78.35% / 87.39%)
 Ligation Motif Present: 111,992  (45.71% / 50.98%)
 3' Bias (Long Range): 58% - 42%
 Pair Type intra chrom %(L-I-O-R): 7% - 78% - 8% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 65.1%
Inter-chromosomal: 26,091  (10.65% / 11.88%)
Intra-chromosomal: 165,877  (67.70% / 75.52%)
Short Range (<20,000bp): 130,377  (53.21% / 59.35%)
Long Range (>20,000bp): 35,500  (14.49% / 16.16%)