Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/d2liv2 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  221,411
 Normal Paired: 134,150 (60.59%)
 Chimeric Paired: 63,671 (28.76%)
 Chimeric Ambiguous: 21,319 (9.63%)
 Unmapped: 2,271 (1.03%)
 Ligation Motif Present: 138,285 (62.46%)
Alignable (Normal+Chimeric Paired): 197,821 (89.35%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T12:55:35,073]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 195,696 (88.39%)
PCR Duplicates: 1,539 (0.70%)
Optical Duplicates: 586 (0.26%)
Library Complexity Estimate: 12,572,780
Intra-fragment Reads: 61,802 (27.91% / 31.58%)
Below MAPQ Threshold: 24,612 (11.12% / 12.58%)
Hi-C Contacts: 171,084 (77.27% / 87.42%)
 Ligation Motif Present: 99,662  (45.01% / 50.93%)
 3' Bias (Long Range): 58% - 42%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 62%
 Cis/all (FF and RR orient): 60.0%
Inter-chromosomal: 26,170  (11.82% / 13.37%)
Intra-chromosomal: 144,914  (65.45% / 74.05%)
Short Range (<20,000bp): 115,240  (52.05% / 58.89%)
Long Range (>20,000bp): 29,674  (13.40% / 15.16%)