Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/d4cb -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  356,301
 Normal Paired: 195,442 (54.85%)
 Chimeric Paired: 120,350 (33.78%)
 Chimeric Ambiguous: 38,108 (10.70%)
 Unmapped: 2,401 (0.67%)
 Ligation Motif Present: 256,795 (72.07%)
Alignable (Normal+Chimeric Paired): 315,792 (88.63%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T12:56:23,806]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 312,655 (87.75%)
PCR Duplicates: 2,207 (0.62%)
Optical Duplicates: 930 (0.26%)
Library Complexity Estimate: 22,354,841
Intra-fragment Reads: 84,642 (23.76% / 27.07%)
Below MAPQ Threshold: 37,614 (10.56% / 12.03%)
Hi-C Contacts: 275,041 (77.19% / 87.97%)
 Ligation Motif Present: 189,235  (53.11% / 60.53%)
 3' Bias (Long Range): 61% - 39%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 56%
 Cis/all (FF and RR orient): 48.0%
Inter-chromosomal: 63,117  (17.71% / 20.19%)
Intra-chromosomal: 211,924  (59.48% / 67.78%)
Short Range (<20,000bp): 161,754  (45.40% / 51.74%)
Long Range (>20,000bp): 50,170  (14.08% / 16.05%)