Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/d4kid -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  471,552
 Normal Paired: 337,673 (71.61%)
 Chimeric Paired: 95,837 (20.32%)
 Chimeric Ambiguous: 36,378 (7.71%)
 Unmapped: 1,664 (0.35%)
 Ligation Motif Present: 40,700 (8.63%)
Alignable (Normal+Chimeric Paired): 433,510 (91.93%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T12:56:43,023]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 417,134 (88.46%)
PCR Duplicates: 15,063 (3.19%)
Optical Duplicates: 1,313 (0.28%)
Library Complexity Estimate: 6,055,514
Intra-fragment Reads: 227,101 (48.16% / 54.44%)
Below MAPQ Threshold: 44,248 (9.38% / 10.61%)
Hi-C Contacts: 372,886 (79.08% / 89.39%)
 Ligation Motif Present: 27,890  (5.91% / 6.69%)
 3' Bias (Long Range): 49% - 51%
 Pair Type intra chrom %(L-I-O-R): 3% - 90% - 4% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 73%
 Cis/all (FF and RR orient): 38.1%
Inter-chromosomal: 61,579  (13.06% / 14.76%)
Intra-chromosomal: 311,307  (66.02% / 74.63%)
Short Range (<20,000bp): 280,753  (59.54% / 67.31%)
Long Range (>20,000bp): 30,554  (6.48% / 7.32%)