Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/d4liv -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  401,697
 Normal Paired: 261,591 (65.12%)
 Chimeric Paired: 105,358 (26.23%)
 Chimeric Ambiguous: 30,442 (7.58%)
 Unmapped: 4,306 (1.07%)
 Ligation Motif Present: 222,626 (55.42%)
Alignable (Normal+Chimeric Paired): 366,949 (91.35%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T12:56:40,264]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 361,403 (89.97%)
PCR Duplicates: 4,463 (1.11%)
Optical Duplicates: 1,083 (0.27%)
Library Complexity Estimate: 14,874,202
Intra-fragment Reads: 127,580 (31.76% / 35.30%)
Below MAPQ Threshold: 44,043 (10.96% / 12.19%)
Hi-C Contacts: 317,360 (79.00% / 87.81%)
 Ligation Motif Present: 166,473  (41.44% / 46.06%)
 3' Bias (Long Range): 57% - 43%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 67%
 Cis/all (FF and RR orient): 67.2%
Inter-chromosomal: 34,750  (8.65% / 9.62%)
Intra-chromosomal: 282,610  (70.35% / 78.20%)
Short Range (<20,000bp): 231,097  (57.53% / 63.94%)
Long Range (>20,000bp): 51,513  (12.82% / 14.25%)