Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/wtcb -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  217,466
 Normal Paired: 127,239 (58.51%)
 Chimeric Paired: 68,238 (31.38%)
 Chimeric Ambiguous: 21,074 (9.69%)
 Unmapped: 915 (0.42%)
 Ligation Motif Present: 142,060 (65.33%)
Alignable (Normal+Chimeric Paired): 195,477 (89.89%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T12:55:26,355]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 193,454 (88.96%)
PCR Duplicates: 1,425 (0.66%)
Optical Duplicates: 598 (0.27%)
Library Complexity Estimate: 13,260,513
Intra-fragment Reads: 54,616 (25.11% / 28.23%)
Below MAPQ Threshold: 22,716 (10.45% / 11.74%)
Hi-C Contacts: 170,738 (78.51% / 88.26%)
 Ligation Motif Present: 105,548  (48.54% / 54.56%)
 3' Bias (Long Range): 61% - 39%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 24% - 25% - 26% - 25%
 DE: 60%
 Cis/all (FF and RR orient): 45.9%
Inter-chromosomal: 37,102  (17.06% / 19.18%)
Intra-chromosomal: 133,636  (61.45% / 69.08%)
Short Range (<20,000bp): 106,001  (48.74% / 54.79%)
Long Range (>20,000bp): 27,635  (12.71% / 14.29%)