Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/wtkid -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  259,605
 Normal Paired: 189,442 (72.97%)
 Chimeric Paired: 54,121 (20.85%)
 Chimeric Ambiguous: 14,983 (5.77%)
 Unmapped: 1,059 (0.41%)
 Ligation Motif Present: 92,918 (35.79%)
Alignable (Normal+Chimeric Paired): 243,563 (93.82%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T12:55:37,604]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 239,829 (92.38%)
PCR Duplicates: 2,928 (1.13%)
Optical Duplicates: 806 (0.31%)
Library Complexity Estimate: 9,982,264
Intra-fragment Reads: 103,214 (39.76% / 43.04%)
Below MAPQ Threshold: 26,915 (10.37% / 11.22%)
Hi-C Contacts: 212,914 (82.01% / 88.78%)
 Ligation Motif Present: 69,582  (26.80% / 29.01%)
 3' Bias (Long Range): 52% - 48%
 Pair Type intra chrom %(L-I-O-R): 4% - 87% - 5% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 24% - 25%
 DE: 73%
 Cis/all (FF and RR orient): 56.2%
Inter-chromosomal: 24,793  (9.55% / 10.34%)
Intra-chromosomal: 188,121  (72.46% / 78.44%)
Short Range (<20,000bp): 163,579  (63.01% / 68.21%)
Long Range (>20,000bp): 24,542  (9.45% / 10.23%)