Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 6 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/Unc5b_Review/wtliv -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/mm10_canonical/mm10_canonical.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 6                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  249,242
 Normal Paired: 146,109 (58.62%)
 Chimeric Paired: 77,120 (30.94%)
 Chimeric Ambiguous: 25,004 (10.03%)
 Unmapped: 1,009 (0.40%)
 Ligation Motif Present: 163,535 (65.61%)
Alignable (Normal+Chimeric Paired): 223,229 (89.56%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T12:55:41,776]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 220,737 (88.56%)
PCR Duplicates: 1,616 (0.65%)
Optical Duplicates: 876 (0.35%)
Library Complexity Estimate: 15,223,086
Intra-fragment Reads: 65,788 (26.40% / 29.80%)
Below MAPQ Threshold: 27,098 (10.87% / 12.28%)
Hi-C Contacts: 193,639 (77.69% / 87.72%)
 Ligation Motif Present: 119,639  (48.00% / 54.20%)
 3' Bias (Long Range): 58% - 42%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 60%
 Cis/all (FF and RR orient): 58.0%
Inter-chromosomal: 32,824  (13.17% / 14.87%)
Intra-chromosomal: 160,815  (64.52% / 72.85%)
Short Range (<20,000bp): 124,574  (49.98% / 56.44%)
Long Range (>20,000bp): 36,241  (14.54% / 16.42%)