Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2022-12-15_Novogene/Paul/kid_unc3 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  241,979
 Normal Paired: 133,258 (55.07%)
 Chimeric Paired: 82,426 (34.06%)
 Chimeric Ambiguous: 22,429 (9.27%)
 Unmapped: 3,866 (1.60%)
 Ligation Motif Present: 140,271 (57.97%)
Alignable (Normal+Chimeric Paired): 215,684 (89.13%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-12-15T17:14:29,163]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 173,042 (71.51%)
PCR Duplicates: 41,101 (16.99%)
Optical Duplicates: 1,541 (0.64%)
Library Complexity Estimate: 483,927
Intra-fragment Reads: 45,433 (18.78% / 26.26%)
Below MAPQ Threshold: 25,679 (10.61% / 14.84%)
Hi-C Contacts: 101,930 (42.12% / 58.90%)
 Ligation Motif Present: 71,403  (29.51% / 41.26%)
 3' Bias (Long Range): 65% - 35%
 Pair Type intra chrom %(L-I-O-R): 16% - 52% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 24% - 25% - 25% - 25%
 DE: 27%
 Cis/all (FF and RR orient): 66.5%
Inter-chromosomal: 25,024  (10.34% / 14.46%)
Intra-chromosomal: 76,906  (31.78% / 44.44%)
Short Range (<20,000bp): 37,722  (15.59% / 21.80%)
Long Range (>20,000bp): 39,184  (16.19% / 22.64%)