Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2022-12-15_Novogene/Paul/kid_unc3 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 241,979 Normal Paired: 133,258 (55.07%) Chimeric Paired: 82,426 (34.06%) Chimeric Ambiguous: 22,429 (9.27%) Unmapped: 3,866 (1.60%) Ligation Motif Present: 140,271 (57.97%) Alignable (Normal+Chimeric Paired): 215,684 (89.13%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2022-12-15T17:14:29,163] [Globals.java:138] [main] Development mode is enabled Unique Reads: 173,042 (71.51%) PCR Duplicates: 41,101 (16.99%) Optical Duplicates: 1,541 (0.64%) Library Complexity Estimate: 483,927 Intra-fragment Reads: 45,433 (18.78% / 26.26%) Below MAPQ Threshold: 32,625 (13.48% / 18.85%) Hi-C Contacts: 94,984 (39.25% / 54.89%) Ligation Motif Present: 66,448 (27.46% / 38.40%) 3' Bias (Long Range): 66% - 34% Pair Type intra chrom %(L-I-O-R): 16% - 53% - 16% - 16% Pair Type inter chrom %(L-I-O-R): 24% - 25% - 25% - 25% DE: 28% Cis/all (FF and RR orient): 67.6% Inter-chromosomal: 22,138 (9.15% / 12.79%) Intra-chromosomal: 72,846 (30.10% / 42.10%) Short Range (<20,000bp): 36,628 (15.14% / 21.17%) Long Range (>20,000bp): 36,218 (14.97% / 20.93%)