Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2022-12-15_Novogene/Paul/kid_unc7 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  287,996
 Normal Paired: 191,327 (66.43%)
 Chimeric Paired: 51,532 (17.89%)
 Chimeric Ambiguous: 20,173 (7.00%)
 Unmapped: 24,964 (8.67%)
 Ligation Motif Present: 105,875 (36.76%)
Alignable (Normal+Chimeric Paired): 242,859 (84.33%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-12-15T17:16:36,943]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 197,744 (68.66%)
PCR Duplicates: 43,480 (15.10%)
Optical Duplicates: 1,635 (0.57%)
Library Complexity Estimate: 586,058
Intra-fragment Reads: 79,254 (27.52% / 40.08%)
Below MAPQ Threshold: 33,056 (11.48% / 16.72%)
Hi-C Contacts: 85,434 (29.66% / 43.20%)
 Ligation Motif Present: 45,246  (15.71% / 22.88%)
 3' Bias (Long Range): 66% - 34%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 52%
 Cis/all (FF and RR orient): 49.6%
Inter-chromosomal: 20,826  (7.23% / 10.53%)
Intra-chromosomal: 64,608  (22.43% / 32.67%)
Short Range (<20,000bp): 46,943  (16.30% / 23.74%)
Long Range (>20,000bp): 17,665  (6.13% / 8.93%)